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Clostridioides difficile proteins (AlphaFold) · Gut microbiome: 17 3D models

DNA, RNA, nucleic-acid drugs, gene editing, proteins and 300+ real PDB structures (real sizes 1–100 nm). Each one is a ready-made 3D model you can turn, recolour and place in a figure — open BioDiorama and type its name in the Library search.

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4-hydroxyphenylacetate decarboxylase glycyl radical subunit (hpdB, C. difficile) — 4-hydroxyphenylacetate decarboxylase glycyl radical subunit — Clostridioides difficile protein (gene hpdB, 902 amino acids, UniProt Q84F16). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Toxin B (tcdB, C. difficile) — Toxin B — Clostridioides difficile protein (gene tcdB, 2366 amino acids, UniProt P18177). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
(R)-2-hydroxyisocaproyl-CoA dehydratase alpha subunit (hadB, C. difficile) — (R)-2-hydroxyisocaproyl-CoA dehydratase alpha subunit — Clostridioides difficile protein (gene hadB, 408 amino acids, UniProt Q5U924). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Chaperonin GroEL (groEL, C. difficile) — Chaperonin GroEL — Clostridioides difficile protein (gene groEL, 540 amino acids, UniProt Q9KKF0). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
(R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit (hadC, C. difficile) — (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit — Clostridioides difficile protein (gene hadC, 375 amino acids, UniProt Q5U923). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
2-hydroxyisocaproyl-CoA dehydratase activator (hadI, C. difficile) — 2-hydroxyisocaproyl-CoA dehydratase activator — Clostridioides difficile protein (gene hadI, 266 amino acids, UniProt Q5U925). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Trans-4-hydroxy-L-proline dehydratase (pflD, C. difficile) — Trans-4-hydroxy-L-proline dehydratase — Clostridioides difficile protein (gene pflD, 789 amino acids, UniProt A0A031WDE4). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Holin-like protein TcdE (tcdE, C. difficile) — Holin-like protein TcdE — Clostridioides difficile protein (gene tcdE, 166 amino acids, UniProt P16153). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
4-hydroxyphenylacetate decarboxylase small subunit (hpdC, C. difficile) — 4-hydroxyphenylacetate decarboxylase small subunit — Clostridioides difficile protein (gene hpdC, 85 amino acids, UniProt Q84F15). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
D-2-hydroxyacid dehydrogenase (ldhA, C. difficile) — D-2-hydroxyacid dehydrogenase — Clostridioides difficile protein (gene ldhA, 332 amino acids, UniProt Q5U922). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Chloramphenicol acetyltransferase (catD, C. difficile) — Chloramphenicol acetyltransferase — Clostridioides difficile protein (gene catD, 212 amino acids, UniProt P11504). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
4-hydroxyphenylacetate decarboxylase activating enzyme (hpdA, C. difficile) — 4-hydroxyphenylacetate decarboxylase activating enzyme — Clostridioides difficile protein (gene hpdA, 316 amino acids, UniProt Q84F14). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Trans-4-hydroxy-L-proline dehydratase activating enzyme (pflE, C. difficile) — Trans-4-hydroxy-L-proline dehydratase activating enzyme — Clostridioides difficile protein (gene pflE, 302 amino acids, UniProt A0A069AMK2). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
(R)-2-hydroxy-4-methylpentanoate CoA-transferase (hadA, C. difficile) — (R)-2-hydroxy-4-methylpentanoate CoA-transferase — Clostridioides difficile protein (gene hadA, 399 amino acids, UniProt Q5U921). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
NAD-specific glutamate dehydrogenase (gluD, C. difficile) — NAD-specific glutamate dehydrogenase — Clostridioides difficile protein (gene gluD, 421 amino acids, UniProt P27346). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
Co-chaperonin GroES (groES, C. difficile) — Co-chaperonin GroES — Clostridioides difficile protein (gene groES, 94 amino acids, UniProt Q9KKF1). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).
3-hydroxybutyryl-CoA dehydrogenase (hbd, C. difficile) — 3-hydroxybutyryl-CoA dehydrogenase — Clostridioides difficile protein (gene hbd, 281 amino acids, UniProt P45364). AlphaFold-predicted 3D structure; by default coloured by model confidence (blue = very high, orange = very low, typical of disordered regions).