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Immunity (PDB): 90 3D models

DNA, RNA, nucleic-acid drugs, gene editing, proteins and 300+ real PDB structures (real sizes 1–100 nm). Each one is a ready-made 3D model you can turn, recolour and place in a figure — open BioDioRama and type its name in the Library search.

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Plasmodium vivax apical membrane antigen 1-Fab F8.12.19 complex — Structure of a plasmodium vivax apical membrane antigen 1-fab f8.12.19 complex — X-ray structure, 2007 (PDB 2J4W), downloaded from the RCSB Protein Data Bank.
Refined crystal structure of the MC/PC603 fab-phosphocholine complex… — Refined crystal structure of the mc/pc603 fab-phosphocholine complex at 3.1 angstroms resolution — X-ray structure, 1985 (PDB 2MCP), downloaded from the RCSB Protein Data Bank.
IGG FAB (human IGG1, kappa) chimeric fragment (CBR96) — Igg fab (human igg1, kappa) chimeric fragment (cbr96) complexed with lewis y nonoate methyl ester — X-ray structure, 1996 (PDB 1CLY), downloaded from the RCSB Protein Data Bank.
WaaL O-antigen ligase in its apo state — Single-particle cryo-em structure of the waal o-antigen ligase in its apo state — Cryo-EM structure, 2022 (PDB 7TPJ), downloaded from the RCSB Protein Data Bank.
Human immunoglobulin fragment FAB new refined at 2.0 angstroms… — Crystal structure of human immunoglobulin fragment fab new refined at 2.0 angstroms resolution — X-ray structure, 1994 (PDB 7FAB), downloaded from the RCSB Protein Data Bank.
Clec4f Nanobody 322 — Clec4f nanobody 322 — X-ray structure, 2021 (PDB 7DJY), downloaded from the RCSB Protein Data Bank.
Clec4f Nanobody 246 — Clec4f nanobody 246 — X-ray structure, 2021 (PDB 7DJX), downloaded from the RCSB Protein Data Bank.
Nanobody — Crystal structure of nanobody — X-ray structure, 2020 (PDB 6JRI), downloaded from the RCSB Protein Data Bank.
GFP:GFP-nanobody complex from Biortus — Structure of the gfp:gfp-nanobody complex from biortus. — X-ray structure, 2024 (PDB 8XLD), downloaded from the RCSB Protein Data Bank.
APH coiled-coil in complex with nanobody Nb26 — Crystal structure of the aph coiled-coil in complex with nanobody nb26 — X-ray structure, 2021 (PDB 7A50), downloaded from the RCSB Protein Data Bank.
Anti-EGFR nanobody EgB4 — Anti-egfr nanobody egb4 — X-ray structure, 2022 (PDB 7OM5), downloaded from the RCSB Protein Data Bank.
APH coiled-coil in complex with Nb49 — Crystal structure of the aph coiled-coil in complex with nb49 — X-ray structure, 2021 (PDB 7A48), downloaded from the RCSB Protein Data Bank.
SLA-2*1001 allele and ASFV antigenic peptide at 2.2A resolution — Crystal structure of the sla-2*1001 allele and asfv antigenic peptide at 2.2a resolution — X-ray structure, 2024 (PDB 8W6L), downloaded from the RCSB Protein Data Bank.
Bat MHC class i ptal-n*01:01 for 2.2 angstrom — Crystal structure of bat mhc class i ptal-n*01:01 for 2.2 angstrom — X-ray structure, 2019 (PDB 6ILC), downloaded from the RCSB Protein Data Bank.
Mutant ptal-n*01:01 for 2.9 angstrom, 52M 53D 54L deleted — Crystal structure of a mutant ptal-n*01:01 for 2.9 angstrom, 52m 53d 54l deleted — X-ray structure, 2019 (PDB 6ILE), downloaded from the RCSB Protein Data Bank.
Class II MHC i-ad in complex with an influenza hemagglutinin peptide… — Class ii mhc i-ad in complex with an influenza hemagglutinin peptide 126-138 — X-ray structure, 1998 (PDB 2IAD), downloaded from the RCSB Protein Data Bank.
Cattle MHC class I N01301 presenting an 11mer from Theileria parva — cattle mhc class i n01301 presenting an 11mer from theileria parva — X-ray structure, 2010 (PDB 2XFX), downloaded from the RCSB Protein Data Bank.
8-mer peptide from avian influenza H5N1 virus in complex with BF2*1501 — Crystal structure of 8-mer peptide from avian influenza h5n1 virus in complex with bf2*1501 — X-ray structure, 2020 (PDB 6KX9), downloaded from the RCSB Protein Data Bank.
Evidence that structural rearrangements and/or flexibility during… (1R5V) — Evidence that structural rearrangements and/or flexibility during tcr binding can contribute to t-cell activation — X-ray structure, 2004 (PDB 1R5V), downloaded from the RCSB Protein Data Bank.
Histocompatibility antigen hla-dm — Histocompatibility antigen hla-dm — X-ray structure, 1999 (PDB 1HDM), downloaded from the RCSB Protein Data Bank.
I-au/mbp125-135 — I-au/mbp125-135 — X-ray structure, 2008 (PDB 2P24), downloaded from the RCSB Protein Data Bank.
Hla-dm — Crystal structure of hla-dm — X-ray structure, 2006 (PDB 2BC4), downloaded from the RCSB Protein Data Bank.
Class II MHC i-ad in complex with ovalbumin peptide 323-339 — Class ii mhc i-ad in complex with ovalbumin peptide 323-339 — X-ray structure, 1998 (PDB 1IAO), downloaded from the RCSB Protein Data Bank.
Class II MHC molecule iab bound to EALPHA3K peptide — Crystal structure of class ii mhc molecule iab bound to ealpha3k peptide — X-ray structure, 2002 (PDB 1LNU), downloaded from the RCSB Protein Data Bank.
HLA-DO in complex with HLA-DM — Hla-do in complex with hla-dm — X-ray structure, 2012 (PDB 4I0P), downloaded from the RCSB Protein Data Bank.
Membrane protein(WT) — Cryo-em structure of a membrane protein(wt) — Cryo-EM structure, 2022 (PDB 7FJD), downloaded from the RCSB Protein Data Bank.
Membrane protein(CS) — Cryo-em structure of a membrane protein(cs) — Cryo-EM structure, 2022 (PDB 7FJF), downloaded from the RCSB Protein Data Bank.
PN45545 TCR-CD3 complex — Cryoem structure of pn45545 tcr-cd3 complex — Cryo-EM structure, 2023 (PDB 8ES7), downloaded from the RCSB Protein Data Bank.
V gamma9 V delta2 TCR and CD3 complex in LMNG — V gamma9 v delta2 tcr and cd3 complex in lmng — Cryo-EM structure, 2024 (PDB 8JC0), downloaded from the RCSB Protein Data Bank.
T cell receptor complex (9CIA) — T cell receptor complex — Cryo-EM structure, 2024 (PDB 9CIA), downloaded from the RCSB Protein Data Bank.
Fab-CD3-delta epsilon-TCR complex — Fab-cd3-delta epsilon-tcr complex — Cryo-EM structure, 2025 (PDB 9JY2), downloaded from the RCSB Protein Data Bank.
T cell receptor complex (9CI8) — T cell receptor complex — Cryo-EM structure, 2024 (PDB 9CI8), downloaded from the RCSB Protein Data Bank.
TCR GDN detergent micelle — Tcr gdn detergent micelle — Cryo-EM structure, 2024 (PDB 9BBC), downloaded from the RCSB Protein Data Bank.
Cobra Venom Factor, a Co-factor for C3- and C5 convertase CVFBb — Crystal structure of cobra venom factor, a co-factor for c3- and c5 convertase cvfbb — X-ray structure, 2009 (PDB 3FRP), downloaded from the RCSB Protein Data Bank.
3C9-sMAC — cryoem structure of 3c9-smac — Cryo-EM structure, 2021 (PDB 7NYC), downloaded from the RCSB Protein Data Bank.
Complement protein C8 in complex with a peptide containing the C8… — Crystal structure of complement protein c8 in complex with a peptide containing the c8 binding site on c8 — X-ray structure, 2007 (PDB 2QOS), downloaded from the RCSB Protein Data Bank.
Crystallographic structure of human C1q globular heads (P1) — Crystallographic structure of human c1q globular heads (p1) — X-ray structure, 2008 (PDB 2JG9), downloaded from the RCSB Protein Data Bank.
SLA-1*0808 allele and ASFV antigenic peptide at 1.8 A resolution — Crystal structure of the sla-1*0808 allele and asfv antigenic peptide at 1.8 a resolution — X-ray structure, 2026 (PDB 9M01), downloaded from the RCSB Protein Data Bank.
Plasmodium vivax Apical Membrane Antigen 1/Fab complex — Plasmodium vivax apical membrane antigen 1/fab complex — X-ray structure, 2024 (PDB 8REK), downloaded from the RCSB Protein Data Bank.
A2.3 Nanobody In Complex With Microcystin-LR — A2.3 nanobody in complex with microcystin-lr — X-ray structure, 2023 (PDB 8FIF), downloaded from the RCSB Protein Data Bank.
2C9-sMAC — cryoem structure of 2c9-smac — Cryo-EM structure, 2021 (PDB 7NYD), downloaded from the RCSB Protein Data Bank.
Synthetic nanobody (Sb16) — Crystal structure of synthetic nanobody (sb16) — X-ray structure, 2021 (PDB 7MFV), downloaded from the RCSB Protein Data Bank.
Membrane protein(LL) — Cryo-em structure of a membrane protein(ll) — Cryo-EM structure, 2022 (PDB 7FJE), downloaded from the RCSB Protein Data Bank.
Anolis carolinensis MHC I complex — Crystal structure of anolis carolinensis mhc i complex — X-ray structure, 2021 (PDB 7CPO), downloaded from the RCSB Protein Data Bank.
CLIP peptide bound to chicken MHC class II molecule (BL-2) from B19… — Clip peptide bound to chicken mhc class ii molecule (bl-2) from b19 haplotype — X-ray structure, 2021 (PDB 6ZWA), downloaded from the RCSB Protein Data Bank.
PSLA-1*1301(F99Y) complex with S-OIV-derived epitope NSDTVGWSW — Crystal structure of psla-1*1301(f99y) complex with s-oiv-derived epitope nsdtvgwsw — X-ray structure, 2020 (PDB 6KWN), downloaded from the RCSB Protein Data Bank.
Cystal structure of human factor VIII C2 domain in a ternary complex… — Cystal structure of human factor viii c2 domain in a ternary complex with murine inhbitory antibodies 3e6 and g99 — X-ray structure, 2014 (PDB 4KI5), downloaded from the RCSB Protein Data Bank.
Plasmodium falciparum apical membrane antigen 1-Fab F8. 12.19 complex — Structure of a plasmodium falciparum apical membrane antigen 1-fab f8. 12.19 complex — X-ray structure, 2007 (PDB 2J5L), downloaded from the RCSB Protein Data Bank.
Evidence that structural rearrangements and/or flexibility during… (1R5W) — Evidence that structural rearrangements and/or flexibility during tcr binding can contribute to t-cell activation — X-ray structure, 2004 (PDB 1R5W), downloaded from the RCSB Protein Data Bank.
AZGP1-Fab complex — Cryo-em structure of azgp1-fab complex — Cryo-EM structure, 2026 (PDB 13BR), downloaded from the RCSB Protein Data Bank.
Globular Head of the Complement System Protein C1q — Globular head of the complement system protein c1q — X-ray structure, 2003 (PDB 1PK6), downloaded from the RCSB Protein Data Bank.
Human complement C4 rebuilt using iMDFF — Structure of human complement c4 rebuilt using imdff — X-ray structure, 2016 (PDB 5JPN), downloaded from the RCSB Protein Data Bank.
C2b, a Fragment of Complement Component C2 produced during… — The crystal structure of c2b, a fragment of complement component c2 produced during c3-convertase formation — X-ray structure, 2009 (PDB 3ERB), downloaded from the RCSB Protein Data Bank.
Human Complement Membrane Attack Proteins Share a Common Fold with… — Human complement membrane attack proteins share a common fold with bacterial cytolysins — X-ray structure, 2008 (PDB 2RD7), downloaded from the RCSB Protein Data Bank.
The TIR domain of human Toll-Like Receptor 10 (TLR10) — The tir domain of human toll-like receptor 10 (tlr10) — X-ray structure, 2006 (PDB 2J67), downloaded from the RCSB Protein Data Bank.
C-Phycocyanin from Leptolyngbya sp. N62DM — Crystal structure of c-phycocyanin from leptolyngbya sp. n62dm — X-ray structure, 2014 (PDB 4L1E), downloaded from the RCSB Protein Data Bank.
TIR domain of the Toll-related Receptor TRR-2 from the lower… — Crystal structure of the tir domain of the toll-related receptor trr-2 from the lower metazoan hydra magnipapillata (crystal form i) — X-ray structure, 2015 (PDB 4W8G), downloaded from the RCSB Protein Data Bank.
Chicken Toll-like receptor 15 TIR domain (2-mercaptoethanol adduct) — Crystal structure of the chicken toll-like receptor 15 tir domain (2-mercaptoethanol adduct) — X-ray structure, 2023 (PDB 7YLF), downloaded from the RCSB Protein Data Bank.
TIR domain of human TLR1 (crystallised with Zn2+ ions) — Crystal structure of the tir domain of human tlr1 (crystallised with zn2+ ions) — X-ray structure, 2021 (PDB 7NUW), downloaded from the RCSB Protein Data Bank.
TIR domain of human TLR1 (crystallised without ZN2+ ions) — Crystal structure of the tir domain of human tlr1 (crystallised without zn2+ ions) — X-ray structure, 2021 (PDB 7NUX), downloaded from the RCSB Protein Data Bank.
IL-22/IL-22R1 complex — Crystal structure of the il-22/il-22r1 complex — X-ray structure, 2008 (PDB 3DLQ), downloaded from the RCSB Protein Data Bank.
A Cytokine-receptor complex — A cytokine-receptor complex — X-ray structure, 2020 (PDB 6NMY), downloaded from the RCSB Protein Data Bank.
Complex of the IL-5 inhibitory peptide AF17121 — Structure of the complex of the il-5 inhibitory peptide af17121 bound to the il-5 receptor il-5ralpha — X-ray structure, 2018 (PDB 6H41), downloaded from the RCSB Protein Data Bank.
2.7 A structure of the extracellular domains of the human beta… — 2.7 a structure of the extracellular domains of the human beta common receptor involved in il-3, il-5, and gm-csf signalling — X-ray structure, 2006 (PDB 2GYS), downloaded from the RCSB Protein Data Bank.
Complete extracellular domain of the beta-common receptor of IL-3… — Crystal structure of the complete extracellular domain of the beta-common receptor of il-3, il-5, and gm-csf — X-ray structure, 2001 (PDB 1GH7), downloaded from the RCSB Protein Data Bank.
Cytokyne-binding region of GP130 — Cytokyne-binding region of gp130 — X-ray structure, 1998 (PDB 1BQU), downloaded from the RCSB Protein Data Bank.
FnIII domains of human GP130 (Domains 4-6) — Crystal structure of fniii domains of human gp130 (domains 4-6) — X-ray structure, 2010 (PDB 3L5I), downloaded from the RCSB Protein Data Bank.
Interleukin-1 receptor antagonist at 2.0 angstroms resolution — X-ray structure of interleukin-1 receptor antagonist at 2.0 angstroms resolution — X-ray structure, 1995 (PDB 1ILT), downloaded from the RCSB Protein Data Bank.
Interleukin-1 receptor antagonist — Crystal structure of the interleukin-1 receptor antagonist — X-ray structure, 1995 (PDB 1ILR), downloaded from the RCSB Protein Data Bank.
Initial crystallographic analyses of a recombinant interleukin-1… — Initial crystallographic analyses of a recombinant interleukin-1 receptor antagonist protein — X-ray structure, 1994 (PDB 2IRT), downloaded from the RCSB Protein Data Bank.
Recombinant human interleukin-22 — Crystal structure of recombinant human interleukin-22 — X-ray structure, 2003 (PDB 1M4R), downloaded from the RCSB Protein Data Bank.
Murine IL-1F5 reveals unique loop conformation for specificity — High resolution crystal structure of murine il-1f5 reveals unique loop conformation for specificity — X-ray structure, 2003 (PDB 1MD6), downloaded from the RCSB Protein Data Bank.
Complex of the interleukin-1 receptor with the interleukin-1… — Complex of the interleukin-1 receptor with the interleukin-1 receptor antagonist (il1ra) — X-ray structure, 1998 (PDB 1IRA), downloaded from the RCSB Protein Data Bank.
Toll/interleukin-1 receptor domain of human IL-1R10 (IL-1RAPL2) — Crystal structure of the toll/interleukin-1 receptor domain of human il-1r10 (il-1rapl2) — X-ray structure, 2022 (PDB 7SZL), downloaded from the RCSB Protein Data Bank.
P20/P12 of caspase-11 mutant C254A — P20/p12 of caspase-11 mutant c254a — X-ray structure, 2020 (PDB 6KN1), downloaded from the RCSB Protein Data Bank.
P22/P10 complex of caspase-11 mutant C254A — P22/p10 complex of caspase-11 mutant c254a — X-ray structure, 2020 (PDB 6KMU), downloaded from the RCSB Protein Data Bank.
Complex of interleukin-1beta converting enzyme (ice) with a peptide… — Crystal structure of the complex of interleukin-1beta converting enzyme (ice) with a peptide based inhibitor, (3s )-n-methanesulfonyl-3-({1-[n-(2-naphtoyl)-l-valyl]-l-prolyl }amino)-4-oxobutanamide — X-ray structure, 1998 (PDB 1BMQ), downloaded from the RCSB Protein Data Bank.
Inhibited interleukin-1beta converting enzyme — Crystal structure of inhibited interleukin-1beta converting enzyme — X-ray structure, 1998 (PDB 1IBC), downloaded from the RCSB Protein Data Bank.
Structure and mechanism of interleukin-1beta converting enzyme — Structure and mechanism of interleukin-1beta converting enzyme — X-ray structure, 1995 (PDB 1ICE), downloaded from the RCSB Protein Data Bank.
Human caspase-1 in complex with… (1RWK) — Crystal structure of human caspase-1 in complex with 3-(2-mercapto-acetylamino)-4-oxo-pentanoic acid — X-ray structure, 2004 (PDB 1RWK), downloaded from the RCSB Protein Data Bank.
Human caspase-1 in complex with… (1RWM) — Crystal structure of human caspase-1 in complex with 4-oxo-3-[2-(5-{[4-(quinoxalin-2-ylamino)-benzoylamino]-methyl}-thiophen-2-yl)-acetylamino]-pentanoic acid — X-ray structure, 2004 (PDB 1RWM), downloaded from the RCSB Protein Data Bank.
Human caspase-1 in complex with… (1RWN) — Crystal structure of human caspase-1 in complex with 3-{2-ethyl-6-[4-(quinoxalin-2-ylamino)-benzoylamino]-hexanoylamino}-4-oxo-butyric acid — X-ray structure, 2004 (PDB 1RWN), downloaded from the RCSB Protein Data Bank.
Human caspase-1 in complex with… (1RWO) — Crystal structure of human caspase-1 in complex with 4-oxo-3-{6-[4-(quinoxalin-2-ylamino)-benzoylamino]-2-thiophen-2-yl-hexanoylamino}-pentanoic acid — X-ray structure, 2004 (PDB 1RWO), downloaded from the RCSB Protein Data Bank.
Chicken Toll-like receptor 15 TIR domain (glutathione adduct) — Crystal structure of the chicken toll-like receptor 15 tir domain (glutathione adduct) — X-ray structure, 2023 (PDB 7YLG), downloaded from the RCSB Protein Data Bank.
Cryptic TIR — Cryptic tir — X-ray structure, 2016 (PDB 5FOR), downloaded from the RCSB Protein Data Bank.
Double Loop-Swapped Interleukin-36Ra — Crystal structure of double loop-swapped interleukin-36ra — X-ray structure, 2014 (PDB 4P0K), downloaded from the RCSB Protein Data Bank.
Leukemia Inhibitory Factor Receptor (LIF-R) domains D1-D5 — Structure of the leukemia inhibitory factor receptor (lif-r) domains d1-d5 — X-ray structure, 2008 (PDB 3E0G), downloaded from the RCSB Protein Data Bank.
SOCS3 in complex with gp130(pTyr757) phosphopeptide — Crystal structure of socs3 in complex with gp130(ptyr757) phosphopeptide. — X-ray structure, 2006 (PDB 2HMH), downloaded from the RCSB Protein Data Bank.
Thymus and activation-regulated chemokine — High resolution crystal structures of thymus and activation-regulated chemokine — X-ray structure, 2003 (PDB 1NR4), downloaded from the RCSB Protein Data Bank.
Tir domain of human TLR1 — Crystal structure of the tir domain of human tlr1 — X-ray structure, 2000 (PDB 1FYV), downloaded from the RCSB Protein Data Bank.