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Plants & photosynthesis (PDB): 63 3D models

DNA, RNA, nucleic-acid drugs, gene editing, proteins and 300+ real PDB structures (real sizes 1–100 nm). Each one is a ready-made 3D model you can turn, recolour and place in a figure — open BioDioRama and type its name in the Library search.

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PSII-I (PSII with Psb27, Psb28, and Psb34) — Structure of psii-i (psii with psb27, psb28, and psb34) — Cryo-EM structure, 2021 (PDB 7NHP), downloaded from the RCSB Protein Data Bank.
Synechocystis photosystem I trimer at 2.5A resolution — Structure of synechocystis photosystem i trimer at 2.5a resolution — X-ray structure, 2018 (PDB 5OY0), downloaded from the RCSB Protein Data Bank.
PSII intermediate Psb28-PSII complex — Cryo-em structure of psii intermediate psb28-psii complex — Cryo-EM structure, 2021 (PDB 7DXH), downloaded from the RCSB Protein Data Bank.
PSII intermediate Psb27-PSII — Cryo-em structure of psii intermediate psb27-psii — Cryo-EM structure, 2026 (PDB 9I82), downloaded from the RCSB Protein Data Bank.
PSII-I prime (PSII with Psb28, and Psb34) — Structure of psii-i prime (psii with psb28, and psb34) — Cryo-EM structure, 2021 (PDB 7NHQ), downloaded from the RCSB Protein Data Bank.
PSII intermediate Psb28-RC47 — Psii intermediate psb28-rc47 — Cryo-EM structure, 2021 (PDB 7DXA), downloaded from the RCSB Protein Data Bank.
Apo-Photosystem II from Synechocystis sp. PCC 6803 — Cryo-em structure of apo-photosystem ii from synechocystis sp. pcc 6803 — Cryo-EM structure, 2020 (PDB 6WJ6), downloaded from the RCSB Protein Data Bank.
Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco)… — Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from green alga, chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate (2-cabp) — X-ray structure, 2002 (PDB 1IR2), downloaded from the RCSB Protein Data Bank.
EPYC1(106-135) peptide-bound Rubisco — Epyc1(106-135) peptide-bound rubisco — Cryo-EM structure, 2020 (PDB 7JSX), downloaded from the RCSB Protein Data Bank.
Non-activated spinach rubisco — Non-activated spinach rubisco in complex with its substrate ribulose-1,5-bisphosphate — X-ray structure, 1997 (PDB 1RCX), downloaded from the RCSB Protein Data Bank.
Activated spinach rubisco — Activated spinach rubisco complexed with 2-carboxyarabinitol 2 bisphosphat and ca2+. — X-ray structure, 2003 (PDB 1UPM), downloaded from the RCSB Protein Data Bank.
Rice Rubisco in complex with 6PG — Structure of rice rubisco in complex with 6pg — X-ray structure, 2012 (PDB 3AXM), downloaded from the RCSB Protein Data Bank.
L290F-A222T chlamydomonas Rubisco mutant — L290f-a222t chlamydomonas rubisco mutant — X-ray structure, 2005 (PDB 1UW9), downloaded from the RCSB Protein Data Bank.
Light-harvesting complex II (B800-850) from rhodospirillum molischianum — Crystal structure of the light-harvesting complex ii (b800-850) from rhodospirillum molischianum — X-ray structure, 1997 (PDB 1LGH), downloaded from the RCSB Protein Data Bank.
LH2 from Rps. acidophila crystallized in lipidic mesophases — Structure of lh2 from rps. acidophila crystallized in lipidic mesophases — X-ray structure, 2006 (PDB 2FKW), downloaded from the RCSB Protein Data Bank.
LH2 B800-850 from Rps. acidophila at 2.0 Angstrom resolution — Crystal structure of lh2 b800-850 from rps. acidophila at 2.0 angstrom resolution — X-ray structure, 2003 (PDB 1NKZ), downloaded from the RCSB Protein Data Bank.
Crystallographic Structure of the LH3 Complex from Rhodopseudomonas… — Crystallographic structure of the lh3 complex from rhodopseudomonas acidophila strain 7050 — X-ray structure, 2001 (PDB 1IJD), downloaded from the RCSB Protein Data Bank.
LH2 complex from Marichromatium purpuratum — Lh2 complex from marichromatium purpuratum — Cryo-EM structure, 2021 (PDB 6ZXA), downloaded from the RCSB Protein Data Bank.
LH1-RC complex from Thermochromatium tepidum in C2 form — Crystal structure of the lh1-rc complex from thermochromatium tepidum in c2 form — X-ray structure, 2014 (PDB 3WMM), downloaded from the RCSB Protein Data Bank.
Photosynthetic LH1-RC super-complex at 1.9 angstrom resolution — Structure of photosynthetic lh1-rc super-complex at 1.9 angstrom resolution — X-ray structure, 2018 (PDB 5Y5S), downloaded from the RCSB Protein Data Bank.
RC-LH1(14)-W complex from Rhodopseudomonas palustris — Rc-lh1(14)-w complex from rhodopseudomonas palustris — Cryo-EM structure, 2021 (PDB 6Z5S), downloaded from the RCSB Protein Data Bank.
RC-LH1(16) complex from Rhodopseudomonas palustris — Rc-lh1(16) complex from rhodopseudomonas palustris — Cryo-EM structure, 2021 (PDB 6Z5R), downloaded from the RCSB Protein Data Bank.
Cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase)… — Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from chlamydomonas reinhardtii — X-ray structure, 2003 (PDB 1Q90), downloaded from the RCSB Protein Data Bank.
3.15 Angstrom cryo-EM structure of the dimeric cytochrome b6f… — 3.15 angstrom cryo-em structure of the dimeric cytochrome b6f complex from synechocystis sp. pcc 6803 with natively bound plastoquinone and lipid molecules. — Cryo-EM structure, 2022 (PDB 7ZXY), downloaded from the RCSB Protein Data Bank.
Cytochrome B6F structure from M. laminosus with the quinone analog… — Cytochrome b6f structure from m. laminosus with the quinone analog inhibitor stigmatellin — X-ray structure, 2014 (PDB 4PV1), downloaded from the RCSB Protein Data Bank.
Cytochrome b6f Complex from M.laminosus — Crystal structure of the cytochrome b6f complex from m.laminosus — X-ray structure, 2007 (PDB 2E74), downloaded from the RCSB Protein Data Bank.
Cytochrome b6f Complex from Mastigocladus laminosus with TDS — Crystal structure of the cytochrome b6f complex from mastigocladus laminosus with tds — X-ray structure, 2013 (PDB 4H13), downloaded from the RCSB Protein Data Bank.
Cytochrome b6f Complex from Nostoc sp. PCC 7120 — Crystal structure of the cytochrome b6f complex from nostoc sp. pcc 7120 — X-ray structure, 2009 (PDB 2ZT9), downloaded from the RCSB Protein Data Bank.
2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP… — 2.8 angstrom cryo-em structure of the dimeric cytochrome b6f-petp complex from synechocystis sp. pcc 6803 with natively bound lipids and plastoquinone molecules — Cryo-EM structure, 2022 (PDB 7R0W), downloaded from the RCSB Protein Data Bank.
Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f… — Internal lipid architecture of the hetero-oligomeric cytochrome b6f complex — X-ray structure, 2014 (PDB 4OGQ), downloaded from the RCSB Protein Data Bank.
PYL10 bound to the ABA pan-agonist 3CB — Pyl10 bound to the aba pan-agonist 3cb — X-ray structure, 2019 (PDB 6NWC), downloaded from the RCSB Protein Data Bank.
Arabidopsis E529Q/E1174Q ABCB19 in the ATP bound state — Structure of the arabidopsis e529q/e1174q abcb19 in the atp bound state — Cryo-EM structure, 2024 (PDB 8WP0), downloaded from the RCSB Protein Data Bank.
Dimeric abscisic acid (ABA) receptor pyrabactin resistance 1 (PYR1)… — Crystal structure of dimeric abscisic acid (aba) receptor pyrabactin resistance 1 (pyr1) with aba-bound closed-lid and aba-free open-lid subunits — X-ray structure, 2009 (PDB 3K3K), downloaded from the RCSB Protein Data Bank.
St. John's wort Hyp-1 protein in complex with melatonin — Crystal structure of st. john's wort hyp-1 protein in complex with melatonin — X-ray structure, 2016 (PDB 5I8F), downloaded from the RCSB Protein Data Bank.
X-ray crystal structure of SLPYL1-E151D mutant — X-ray crystal structure of slpyl1-e151d mutant — X-ray structure, 2022 (PDB 7Z1P), downloaded from the RCSB Protein Data Bank.
Yellow lupin LLPR-10.2B protein — Crystal structure of yellow lupin llpr-10.2b protein in complex with melatonin and trans-zeatin. — X-ray structure, 2018 (PDB 5MXW), downloaded from the RCSB Protein Data Bank.
BRI1 kinase domain (865-1160) — Crystal structure of the bri1 kinase domain (865-1160) in complex with atp from arabidopsis thaliana — X-ray structure, 2016 (PDB 5LPY), downloaded from the RCSB Protein Data Bank.
Photosensory module (PAS-GAF-PHY) of Glycine max phyB — Photosensory module (pas-gaf-phy) of glycine max phyb — X-ray structure, 2020 (PDB 6TL4), downloaded from the RCSB Protein Data Bank.
The complete sensory module of the cyanobacterial phytochrome Cph1… — The complete sensory module of the cyanobacterial phytochrome cph1 in the pr-state. — X-ray structure, 2008 (PDB 2VEA), downloaded from the RCSB Protein Data Bank.
Photosensory core module (PCM) of a bathy phytochrome from… — Crystal structure of the photosensory core module (pcm) of a bathy phytochrome from agrobacterium fabrum in the pfr state. — X-ray structure, 2018 (PDB 6G1Y), downloaded from the RCSB Protein Data Bank.
Glycine max phyA in Pr — Room temperature structure of glycine max phya in pr — X-ray structure, 2025 (PDB 9ER4), downloaded from the RCSB Protein Data Bank.
X-ray crystal structure of VvPYL1 — X-ray crystal structure of vvpyl1 — X-ray structure, 2024 (PDB 9GNM), downloaded from the RCSB Protein Data Bank.
Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr — Pr conformer of zea mays phytochrome a1 - zmphya1-pr — Cryo-EM structure, 2023 (PDB 8ISK), downloaded from the RCSB Protein Data Bank.
Psii-m — Structure of psii-m — Cryo-EM structure, 2021 (PDB 7NHO), downloaded from the RCSB Protein Data Bank.
Rubisco in the apo state — Rubisco in the apo state — Cryo-EM structure, 2020 (PDB 7JN4), downloaded from the RCSB Protein Data Bank.
Cryo- EM structure of the Thermosynechococcus elongatus photosystem… — Cryo- em structure of the thermosynechococcus elongatus photosystem i in the presence of cytochrome c6 — Cryo-EM structure, 2020 (PDB 6TRD), downloaded from the RCSB Protein Data Bank.
Yellow lupin LLPR-10.2B protein in complex with melatonin — Crystal structure of yellow lupin llpr-10.2b protein in complex with melatonin — X-ray structure, 2018 (PDB 5MXB), downloaded from the RCSB Protein Data Bank.
Cytochrome b6f in DOPG, with disordered Rieske Iron-Sulfur Protein… — Crystal structure of cytochrome b6f in dopg, with disordered rieske iron-sulfur protein soluble domain — X-ray structure, 2013 (PDB 4I7Z), downloaded from the RCSB Protein Data Bank.
L290F mutant rubisco from chlamydomonas — L290f mutant rubisco from chlamydomonas — X-ray structure, 2005 (PDB 1UWA), downloaded from the RCSB Protein Data Bank.
Rubisco from galdieria partita — Rubisco from galdieria partita — X-ray structure, 2003 (PDB 1IWA), downloaded from the RCSB Protein Data Bank.
Bacterial cellulose synthase BcsB hexamer — Bacterial cellulose synthase bcsb hexamer — Cryo-EM structure, 2021 (PDB 7L2Z), downloaded from the RCSB Protein Data Bank.
Cotton cellulose synthase isoform 7 — Cryoem structure of cotton cellulose synthase isoform 7 — Cryo-EM structure, 2021 (PDB 7D5K), downloaded from the RCSB Protein Data Bank.
C-di-GMP-bound synthase:pEtN transferase complex (BcsA-Bct-G3) from… — Cryo-em structure of the c-di-gmp-bound synthase:petn transferase complex (bcsa-bct-g3) from the e. coli cellulose secretion macrocomplex — Cryo-EM structure, 2024 (PDB 9FMZ), downloaded from the RCSB Protein Data Bank.
E. coli cellulose synthase BcsB-BcsC fusion protein — Cryo-em structure of the e. coli cellulose synthase bcsb-bcsc fusion protein — Cryo-EM structure, 2025 (PDB 9B8I), downloaded from the RCSB Protein Data Bank.
Glycine max phyA in Pfr/Pr ensemble — Room temperature structure of glycine max phya in pfr/pr ensemble — X-ray structure, 2025 (PDB 9QZT), downloaded from the RCSB Protein Data Bank.
C-di-GMP-free synthase:pEtN transferase complex (BcsA-Bct-G3) from… — Cryo-em structure of the c-di-gmp-free synthase:petn transferase complex (bcsa-bct-g3) from the e. coli cellulose secretion macrocomplex — Cryo-EM structure, 2024 (PDB 9FMV), downloaded from the RCSB Protein Data Bank.
BcsB hexameric crown from the E. coli cellulose secretion macrocomplex — Cryo-em structure of the bcsb hexameric crown from the e. coli cellulose secretion macrocomplex — Cryo-EM structure, 2024 (PDB 9FMT), downloaded from the RCSB Protein Data Bank.
Glycine max phyA in Pfr — Room temperature structure of glycine max phya in pfr — X-ray structure, 2025 (PDB 9F4I), downloaded from the RCSB Protein Data Bank.
Cryo EM structure of a soybean CesA3 homotrimer — Cryo em structure of a soybean cesa3 homotrimer — Cryo-EM structure, 2025 (PDB 8VHT), downloaded from the RCSB Protein Data Bank.
Phytochromobilin-adducted PAS-GAF bidomain of Glycine max phytochrome A — Phytochromobilin-adducted pas-gaf bidomain of glycine max phytochrome a — X-ray structure, 2025 (PDB 8R45), downloaded from the RCSB Protein Data Bank.
PAS-GAF bidomain of Glycine max phytochrome A — Pas-gaf bidomain of glycine max phytochrome a — X-ray structure, 2025 (PDB 8R44), downloaded from the RCSB Protein Data Bank.
Homotrimeric poplar cellulose synthase isoform 8 — Structure of homotrimeric poplar cellulose synthase isoform 8 — Cryo-EM structure, 2020 (PDB 6WLB), downloaded from the RCSB Protein Data Bank.
PilZ domain of CeSA from cellulose synthesizing bacterium — Crystal structure of pilz domain of cesa from cellulose synthesizing bacterium — X-ray structure, 2013 (PDB 4I86), downloaded from the RCSB Protein Data Bank.