Library › DNA & Proteins › Transport, storage & structural (PDB)

Transport, storage & structural (PDB): 109 3D models

DNA, RNA, nucleic-acid drugs, gene editing, proteins and 300+ real PDB structures (real sizes 1–100 nm). Each one is a ready-made 3D model you can turn, recolour and place in a figure — open BioDioRama and type its name in the Library search.

Open the 3D Studio

β-Lactoglobulin — High resolution crystal structure of the bovine beta-lactoglobulin (isoforms a and b) in orthorombic space group — X-ray structure, 2001 (PDB 1B8E), downloaded from the RCSB Protein Data Bank.
Human serum albumin — Crystal structure of human serum albumin — X-ray structure, 1998 (PDB 1AO6), downloaded from the RCSB Protein Data Bank.
Serum albumin with fatty acids — Human serum albumin complexed with hexadecanoic acid (palmitic acid) — X-ray structure, 2000 (PDB 1E7H), downloaded from the RCSB Protein Data Bank.
Transferrin (N-lobe) — Human serum transferrin, recombinant n-terminal lobe — X-ray structure, 1998 (PDB 1A8E), downloaded from the RCSB Protein Data Bank.
Transferrin receptor with transferrin — Structure of human transferrin receptor-transferrin complex — cryo-EM structure, 2004 (PDB 1SUV), downloaded from the RCSB Protein Data Bank.
Transferrin receptor ectodomain — Crystal structure of the ectodomain of human transferrin receptor — X-ray structure, 1999 (PDB 1CX8), downloaded from the RCSB Protein Data Bank.
LDL receptor — Extracellular domain of the ldl receptor — X-ray structure, 2003 (PDB 1N7D), downloaded from the RCSB Protein Data Bank.
Ferritin (human H-chain) — Solving the structure of human h ferritin by genetically engineering intermolecular crystal contacts — X-ray structure, 1992 (PDB 1FHA), downloaded from the RCSB Protein Data Bank.
Lactoferrin — Structure of diferric human lactoferrin — X-ray structure, 1994 (PDB 1LFG), downloaded from the RCSB Protein Data Bank.
Fibrinogen — Crystal structure of human fibrinogen — X-ray structure, 2009 (PDB 3GHG), downloaded from the RCSB Protein Data Bank.
Factor VIII — Crystal structure analysis of coagulation factor viii — X-ray structure, 2008 (PDB 2R7E), downloaded from the RCSB Protein Data Bank.
Tissue factor–factor VIIa — Complex of active site inhibited human blood coagulation factor viia with human recombinant soluble tissue factor — X-ray structure, 1997 (PDB 1DAN), downloaded from the RCSB Protein Data Bank.
Plasminogen — The x-ray crystal structure of full-length type ii human plasminogen — X-ray structure, 2012 (PDB 4DUR), downloaded from the RCSB Protein Data Bank.
Apolipoprotein A-I (HDL model) — Solution structure of double super helix model — solution scattering structure, 2010 (PDB 3K2S), downloaded from the RCSB Protein Data Bank.
Apolipoprotein E3 (receptor-binding domain) — Apolipoprotein e3 (apoe3) — X-ray structure, 1997 (PDB 1NFN), downloaded from the RCSB Protein Data Bank.
Apolipoprotein E3 (full length) — Nmr structure of full length apoe3 — NMR structure, 2011 (PDB 2L7B), downloaded from the RCSB Protein Data Bank.
Collagen triple helix — Collagen — X-ray structure, 1999 (PDB 1BKV), downloaded from the RCSB Protein Data Bank.
Collagen-like peptide — Crystal and molecular structure of a collagen-like peptide at 1.9 angstrom resolution — X-ray structure, 1994 (PDB 1CAG), downloaded from the RCSB Protein Data Bank.
Titin Ig domain — Titin, ig repeat 27, nmr, minimized average structure — NMR structure, 1996 (PDB 1TIT), downloaded from the RCSB Protein Data Bank.
Fibronectin type-III domain — Crystal structure of the tenth type iii cell adhesion module of human fibronectin — X-ray structure, 1994 (PDB 1FNA), downloaded from the RCSB Protein Data Bank.
Integrin αvβ3 — Crystal structure of the extracellular segment of integrin alphavbeta3 — X-ray structure, 2001 (PDB 1JV2), downloaded from the RCSB Protein Data Bank.
Integrin αvβ3 bound to RGD peptide — Crystal structure of the extracellular segment of integrin avb3 in complex with an arg-gly-asp ligand — X-ray structure, 2002 (PDB 1L5G), downloaded from the RCSB Protein Data Bank.
Cadherin — C-cadherin ectodomain — X-ray structure, 2002 (PDB 1L3W), downloaded from the RCSB Protein Data Bank.
Keratin coiled coil — Heterocomplex of coil 2b domains of human intermediate filament proteins, keratin 5 (krt5) and keratin 14 (krt14) — X-ray structure, 2012 (PDB 3TNU), downloaded from the RCSB Protein Data Bank.
Actin — Uncomplexed actin — X-ray structure, 2001 (PDB 1J6Z), downloaded from the RCSB Protein Data Bank.
Tubulin dimer — Tubulin alpha-beta dimer, electron diffraction — electron crystallography structure, 1998 (PDB 1TUB), downloaded from the RCSB Protein Data Bank.
Myosin S1 — Myosin subfragment-1, alpha carbon coordinates only for the two light chains — X-ray structure, 1997 (PDB 2MYS), downloaded from the RCSB Protein Data Bank.
Kinesin motor domain — Human ubiquitous kinesin motor domain — X-ray structure, 1998 (PDB 1BG2), downloaded from the RCSB Protein Data Bank.
Dynein motor domain — X-ray structure of a functional full-length dynein motor domain — X-ray structure, 2012 (PDB 3VKH), downloaded from the RCSB Protein Data Bank.
Calmodulin — Calmodulin structure refined at 1.7 angstroms resolution — X-ray structure, 1993 (PDB 1CLL), downloaded from the RCSB Protein Data Bank.
Calmodulin (Ca2+) — Structure of calmodulin refined at 2.2 angstroms resolution — X-ray structure, 1988 (PDB 3CLN), downloaded from the RCSB Protein Data Bank.
Amyloid-β fibril — 3d structure of alzheimer's abeta(1-42) fibrils — NMR structure, 2005 (PDB 2BEG), downloaded from the RCSB Protein Data Bank.
Tau filament — Paired helical filament in alzheimer's disease brain — cryo-EM structure, 2017 (PDB 5O3L), downloaded from the RCSB Protein Data Bank.
Prion protein — Human prion protein — NMR structure, 1999 (PDB 1QLX), downloaded from the RCSB Protein Data Bank.
Spectrin repeat — Solution structure of the spectrin repeat, nmr, 20 structures — NMR structure, 1997 (PDB 1AJ3), downloaded from the RCSB Protein Data Bank.
Clathrin cage — Clathrin d6 coat — cryo-EM structure, 2004 (PDB 1XI4), downloaded from the RCSB Protein Data Bank.
Clathrin terminal domain — Clathrin heavy-chain terminal domain and linker — X-ray structure, 1998 (PDB 1BPO), downloaded from the RCSB Protein Data Bank.
Dynamin — Crystal structure of nucleotide-free human dynamin1 — X-ray structure, 2011 (PDB 3SNH), downloaded from the RCSB Protein Data Bank.
SNARE complex — Neuronal synaptic fusion complex — X-ray structure, 1998 (PDB 1SFC), downloaded from the RCSB Protein Data Bank.
Caveolin-1 complex — Cryoem structure of the caveolin-1 8s complex — cryo-EM structure, 2022 (PDB 7SC0), downloaded from the RCSB Protein Data Bank.
FMO light-harvesting protein — Fmo protein from prosthecochloris aestuarii 2k at 1.3a resolution — X-ray structure, 2009 (PDB 3EOJ), downloaded from the RCSB Protein Data Bank.
Crambin — Water structure of a hydrophobic protein at atomic resolution. pentagon rings of water molecules in crystals of crambin — X-ray structure, 1981 (PDB 1CRN), downloaded from the RCSB Protein Data Bank.
BPTI — Structure of bovine pancreatic trypsin inhibitor. results of joint neutron and x-ray refinement of crystal form ii — X-ray structure, 1984 (PDB 5PTI), downloaded from the RCSB Protein Data Bank.
Villin headpiece — Thermostable subdomain from chicken villin headpiece, nmr, minimized average structure — NMR structure, 1997 (PDB 1VII), downloaded from the RCSB Protein Data Bank.
Trp-cage miniprotein — Nmr structure of trp-cage miniprotein construct tc5b — NMR structure, 2002 (PDB 1L2Y), downloaded from the RCSB Protein Data Bank.
GCN4 leucine zipper — X-ray structure of the gcn4 leucine zipper, a two-stranded, parallel coiled coil — X-ray structure, 1992 (PDB 2ZTA), downloaded from the RCSB Protein Data Bank.
ROP four-helix bundle — Structure of the col*e1 rop protein at 1.7 angstroms resolution — X-ray structure, 1992 (PDB 1ROP), downloaded from the RCSB Protein Data Bank.
Rubredoxin — Crystallographic refinement of rubredoxin at 1.2 angstroms resolution — X-ray structure, 1985 (PDB 4RXN), downloaded from the RCSB Protein Data Bank.
Cytochrome b562 — Improvement of the 2.5 angstroms resolution model of cytochrome b562 by redetermining the primary structure and using molecular graphics — X-ray structure, 1991 (PDB 256B), downloaded from the RCSB Protein Data Bank.
Ubiquitin — Structure of ubiquitin refined at 1.8 angstroms resolution — X-ray structure, 1987 (PDB 1UBQ), downloaded from the RCSB Protein Data Bank.
Lysozyme — Structural and thermodynamic analysis of compensating mutations within the core of chicken egg white lysozyme — X-ray structure, 1993 (PDB 1HEL), downloaded from the RCSB Protein Data Bank.
Melittin — Melittin — X-ray structure, 1990 (PDB 2MLT), downloaded from the RCSB Protein Data Bank.
Spider silk N-terminal domain — Self-assembly of spider silk proteins is controlled by a ph-sensitive relay — X-ray structure, 2010 (PDB 3LR2), downloaded from the RCSB Protein Data Bank.
Albumin with myristate — Human serum albumin complexed with myristic acid — X-ray structure, 1998 (PDB 1BJ5), downloaded from the RCSB Protein Data Bank.
Albumin with warfarin — Human serum albumin complexed with warfarin — X-ray structure, 2005 (PDB 2BXD), downloaded from the RCSB Protein Data Bank.
Human serum albumin (ligand-free) — Hsa ligand free — X-ray structure, 2013 (PDB 4K2C), downloaded from the RCSB Protein Data Bank.
Albumin with lidocaine — Crystal structure of human serum albumin complexed with lidocaine — X-ray structure, 2010 (PDB 3JQZ), downloaded from the RCSB Protein Data Bank.
Albumin with heme — X-ray study of human serum albumin complexed with heme — X-ray structure, 2003 (PDB 1N5U), downloaded from the RCSB Protein Data Bank.
Transferrin — Human serum transferrin, recombinant n-terminal lobe, apo form — X-ray structure, 1999 (PDB 1BP5), downloaded from the RCSB Protein Data Bank.
Transferrin receptor with transferrin — The 2.9 angstrom crystal structure of transferrin binding protein b (tbpb) from serogroup b m982 neisseria meningitidis in complex with h… — X-ray structure, 2012 (PDB 3VE1), downloaded from the RCSB Protein Data Bank.
Ferritin (human) — Crystal structure of human ferritin phe167serfsx26 mutant. — X-ray structure, 2014 (PDB 4V6B), downloaded from the RCSB Protein Data Bank.
Fibrinogen — Crystal structure of native chicken fibrinogen with two different bound ligands — X-ray structure, 2002 (PDB 1M1J), downloaded from the RCSB Protein Data Bank.
Fibrinogen — Crystal structure of fibrinogen fragment d — X-ray structure, 1997 (PDB 1FZA), downloaded from the RCSB Protein Data Bank.
Collagen triple helix — Low resolution, molecular envelope structure of type i collagen in situ determined by fiber diffraction. single type i collagen molecule,… — fiber diffraction structure, 2009 (PDB 3HQV), downloaded from the RCSB Protein Data Bank.
Collagen — Structural consequences of a discontinuity in the repeating tripeptide sequence of a collagen-like triple-helical peptide — X-ray structure, 2003 (PDB 1EI8), downloaded from the RCSB Protein Data Bank.
Collagen–gelatinase — Hydration structure of a collagen peptide — X-ray structure, 1996 (PDB 1CGD), downloaded from the RCSB Protein Data Bank.
Vimentin — Crystal structure of vimentin (fragment 144-251) from homo sapiens, northeast structural genomics consortium target hr4796b — X-ray structure, 2011 (PDB 3UF1), downloaded from the RCSB Protein Data Bank.
Vimentin coil — Human vimentin coil 2b fragment (cys2) — X-ray structure, 2002 (PDB 1GK4), downloaded from the RCSB Protein Data Bank.
Actin–DNase I — Atomic structure of the actin:dnase i complex — X-ray structure, 1992 (PDB 1ATN), downloaded from the RCSB Protein Data Bank.
F-actin — Structure of the f-actin-tropomyosin complex — cryo-EM structure, 2014 (PDB 3J8A), downloaded from the RCSB Protein Data Bank.
F-actin — Cryo-em structure of f-actin in complex with adp — cryo-EM structure, 2018 (PDB 5ONV), downloaded from the RCSB Protein Data Bank.
Microtubule with kinesin — Cryo-em structure of gmpcpp-microtubule co-polymerized with eb3 — cryo-EM structure, 2015 (PDB 3JAL), downloaded from the RCSB Protein Data Bank.
Kinesin — Kinesin (monomeric) from rattus norvegicus — X-ray structure, 1998 (PDB 2KIN), downloaded from the RCSB Protein Data Bank.
Dynein — High affinity dynein microtubule binding domain - tubulin complex — cryo-EM structure, 2012 (PDB 3J1T), downloaded from the RCSB Protein Data Bank.
Myosin V — Crystal structure of myosin v motor with essential light chain + adp-befx - near rigor — X-ray structure, 2005 (PDB 1W7J), downloaded from the RCSB Protein Data Bank.
Insect flight muscle (actomyosin) — Isometrically contracting insect asynchronous flight muscle — cryo-EM structure, 2010 (PDB 2W4A), downloaded from the RCSB Protein Data Bank.
Myosin regulatory domain — Scallop myosin regulatory domain — X-ray structure, 1996 (PDB 1WDC), downloaded from the RCSB Protein Data Bank.
Myosin S1 — Scallop myosin (s1-adp-befx) in the actin-detached conformation — X-ray structure, 2002 (PDB 1KK8), downloaded from the RCSB Protein Data Bank.
Myosin — Cardiac human myosin s1dc, beta isoform complexed with mn-amppnp — X-ray structure, 2012 (PDB 4DB1), downloaded from the RCSB Protein Data Bank.
Troponin complex — Crystal structure of the 52kda domain of human cardiac troponin in the ca2+ saturated form — X-ray structure, 2003 (PDB 1J1E), downloaded from the RCSB Protein Data Bank.
Tropomyosin — Crystal structure of tropomyosin at 7 angstroms resolution in the spermine-induced crystal form — X-ray structure, 2000 (PDB 1C1G), downloaded from the RCSB Protein Data Bank.
α-Actinin bound to F-actin — Model of alpha-actinin ch1 bound to f-actin — cryo-EM structure, 2010 (PDB 3LUE), downloaded from the RCSB Protein Data Bank.
α-Actinin — Crystal structure of two central spectrin-like repeats from alpha-actinin — X-ray structure, 1999 (PDB 1QUU), downloaded from the RCSB Protein Data Bank.
Ankyrin — D34 region of human ankyrin-r and linker — X-ray structure, 2002 (PDB 1N11), downloaded from the RCSB Protein Data Bank.
Dynamin — Nucleotide-free dynamin 1-like protein (dnm1l, drp1, dlp1) — X-ray structure, 2013 (PDB 4BEJ), downloaded from the RCSB Protein Data Bank.
TubZ filament (bacterial cytoskeleton) — Helical model of tubz-bt four-stranded filament — cryo-EM structure, 2014 (PDB 3J4S), downloaded from the RCSB Protein Data Bank.
Clathrin — Clathrin d6 coat with auxilin j-domain — cryo-EM structure, 2004 (PDB 1XI5), downloaded from the RCSB Protein Data Bank.
Clathrin cage — Clathrin d6 coat as full-length triskelions — cryo-EM structure, 2010 (PDB 3IYV), downloaded from the RCSB Protein Data Bank.
AP2 with cargo — Ap2 clathrin adaptor core in active complex with cargo peptides — X-ray structure, 2010 (PDB 2XA7), downloaded from the RCSB Protein Data Bank.
Lipocalin — 3-d structure of a salivary lipocalin from boar — X-ray structure, 2002 (PDB 1GM6), downloaded from the RCSB Protein Data Bank.
Profilin — Acanthamoeba castellanii profilin ii — X-ray structure, 1994 (PDB 2ACG), downloaded from the RCSB Protein Data Bank.
Apolipoprotein A-I — Crystal structure of human apolipoprotein a-i — X-ray structure, 1998 (PDB 1AV1), downloaded from the RCSB Protein Data Bank.
Apolipoprotein E4 — Apolipoprotein e4, 22k domain — X-ray structure, 2003 (PDB 1GS9), downloaded from the RCSB Protein Data Bank.
ApoE receptor-binding domain — Nmr solution structure of complete receptor binding domain of human apolipoprotein e — NMR structure, 2009 (PDB 2KC3), downloaded from the RCSB Protein Data Bank.
ApoE3 LDL-receptor-binding domain — Three-dimensional structure of the ldl receptor-binding domain of human apolipoprotein e — X-ray structure, 1992 (PDB 1LPE), downloaded from the RCSB Protein Data Bank.
Retinol-binding protein — Retinol-binding protein (rbp) from pig plasma — X-ray structure, 1998 (PDB 1AQB), downloaded from the RCSB Protein Data Bank.
Retinol-binding protein — Crystallographic refinement of human serum retinol binding protein at 2 angstroms resolution — X-ray structure, 1991 (PDB 1RBP), downloaded from the RCSB Protein Data Bank.
Transthyretin — The x-ray crystal structure refinements of normal human transthyretin and the amyloidogenic val30met variant to 1.7 angstroms resolution — X-ray structure, 1993 (PDB 1TTA), downloaded from the RCSB Protein Data Bank.
Transthyretin with thyroxine — Transthyretin (also called prealbumin) complex with thyroxine (t4) — X-ray structure, 1997 (PDB 2ROX), downloaded from the RCSB Protein Data Bank.
Transthyretin — Crystal structure of human transthyretin at 1.5a resolution — X-ray structure, 2000 (PDB 1F41), downloaded from the RCSB Protein Data Bank.
Transthyretin — Monoclinic form of human transthyretin complexed with thyroxine (t4) — X-ray structure, 2002 (PDB 1ICT), downloaded from the RCSB Protein Data Bank.
Thyroxine-binding globulin — Human serum albumin complexed with thyroxine (3,3',5,5'-tetraiodo-l-thyronine) — X-ray structure, 2003 (PDB 1HK1), downloaded from the RCSB Protein Data Bank.
Haptoglobin–hemoglobin — Structure of the haptoglobin-haemoglobin complex — X-ray structure, 2012 (PDB 4F4O), downloaded from the RCSB Protein Data Bank.
Cellulose synthase — Structure of a cellulose synthase - cellulose translocation intermediate — X-ray structure, 2012 (PDB 4HG6), downloaded from the RCSB Protein Data Bank.
Pancreatic amylase — The active center of a mammalian alpha-amylase. the structure of the complex of a pancreatic alpha-amylase with a carbohydrate inhibitor … — X-ray structure, 1995 (PDB 1PPI), downloaded from the RCSB Protein Data Bank.
Pancreatic lipase — The 2.46 angstroms resolution structure of the pancreatic lipase colipase complex inhibited by a c11 alkyl phosphonate — X-ray structure, 1994 (PDB 1LPB), downloaded from the RCSB Protein Data Bank.
Gastric lipase — Rp2 lipase — X-ray structure, 1997 (PDB 1GPL), downloaded from the RCSB Protein Data Bank.
Tissue factor — Extracellular domain of human tissue factor — X-ray structure, 1998 (PDB 1TFH), downloaded from the RCSB Protein Data Bank.
Platelet integrin αIIbβ3 — Integrin alphaiibbeta3 in complex with ro-435054 — X-ray structure, 2016 (PDB 5HDB), downloaded from the RCSB Protein Data Bank.