Library › DNA & Proteins › Viruses & viral proteins (PDB)

Viruses & viral proteins (PDB): 90 3D models

DNA, RNA, nucleic-acid drugs, gene editing, proteins and 300+ real PDB structures (real sizes 1–100 nm). Each one is a ready-made 3D model you can turn, recolour and place in a figure — open BioDioRama and type its name in the Library search.

Open the 3D Studio

Bluetongue virus VP7 — The crystal structure of bluetongue virus vp7 — X-ray structure, 1995 (PDB 1BVP), downloaded from the RCSB Protein Data Bank.
Atomic model for bluetongue virus (btv) core — Atomic model for bluetongue virus (btv) core — X-ray structure, 1998 (PDB 2BTV), downloaded from the RCSB Protein Data Bank.
B-tropic MLV capsid N-terminal domain — Structure of b-tropic mlv capsid n-terminal domain — X-ray structure, 2008 (PDB 3BP9), downloaded from the RCSB Protein Data Bank.
Israeli acute paralysis virus heated to 63 degree - full particle — Israeli acute paralysis virus heated to 63 degree - full particle — Cryo-EM structure, 2016 (PDB 5LWG), downloaded from the RCSB Protein Data Bank.
Cricket paralysis virus (crpv) — Cricket paralysis virus (crpv) — X-ray structure, 1999 (PDB 1B35), downloaded from the RCSB Protein Data Bank.
Israel acute Paralysis Virus Pentamer — Crystal structure of israel acute paralysis virus pentamer — X-ray structure, 2016 (PDB 5CDD), downloaded from the RCSB Protein Data Bank.
HBV capsid mutant dimer (oxy form), strain adyw — Crystal structure of hbv capsid mutant dimer (oxy form), strain adyw — X-ray structure, 2010 (PDB 3KXS), downloaded from the RCSB Protein Data Bank.
Atomic structure of the herpes simplex virus type 2 B-capsid — Atomic structure of the herpes simplex virus type 2 b-capsid — Cryo-EM structure, 2018 (PDB 5ZAP), downloaded from the RCSB Protein Data Bank.
1.86 Angstrom crystal structure of human Coronavirus 229E fusion core — 1.86 angstrom crystal structure of human coronavirus 229e fusion core — X-ray structure, 2018 (PDB 5YL9), downloaded from the RCSB Protein Data Bank.
A structure-based mechanism of SARS virus membrane fusion — A structure-based mechanism of sars virus membrane fusion — X-ray structure, 2006 (PDB 1ZV8), downloaded from the RCSB Protein Data Bank.
Proteolytically Resistant Core from the Severe Acute Respiratory… — Structure of a proteolytically resistant core from the severe acute respiratory syndrome coronavirus s2 fusion protein — X-ray structure, 2004 (PDB 2BEQ), downloaded from the RCSB Protein Data Bank.
CCoV-HuPn-2018 fusion core — Crystal structure of ccov-hupn-2018 fusion core — X-ray structure, 2024 (PDB 8X7Z), downloaded from the RCSB Protein Data Bank.
MERS-CoV spike complex — Mers-cov spike complex — Cryo-EM structure, 2023 (PDB 7X27), downloaded from the RCSB Protein Data Bank.
Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and… — Trypsin-cleaved and low ph-treated sars-cov spike glycoprotein and ace2 complex, ace2-free conformation with three rbd in down conformation — Cryo-EM structure, 2018 (PDB 6ACC), downloaded from the RCSB Protein Data Bank.
Post-fusion core of MjHKUr-CoV spike protein — Crystal structure of the post-fusion core of mjhkur-cov spike protein. — X-ray structure, 2025 (PDB 8X5O), downloaded from the RCSB Protein Data Bank.
Aerosol transmissible influenza H5 hemagglutinin mutant (N158D… — Crystal structure of aerosol transmissible influenza h5 hemagglutinin mutant (n158d, n224k, q226l and t318i) from the influenza virus a/viet nam/1203/2004 (h5n1) — X-ray structure, 2013 (PDB 4N5Z), downloaded from the RCSB Protein Data Bank.
H5N1 influenza virus hemagglutinin from A/goose/Guangdong/1/96 — Crystal structure of a h5n1 influenza virus hemagglutinin from a/goose/guangdong/1/96 — X-ray structure, 2013 (PDB 4MHI), downloaded from the RCSB Protein Data Bank.
H5N1 influenza virus hemagglutinin — Crystal structure of a h5n1 influenza virus hemagglutinin. — X-ray structure, 2006 (PDB 2FK0), downloaded from the RCSB Protein Data Bank.
H5 hemagglutinin mutant (N158D, N224K and Q226L) from the influenza… — Crystal structure of h5 hemagglutinin mutant (n158d, n224k and q226l) from the influenza virus a/viet nam/1203/2004 (h5n1) — X-ray structure, 2013 (PDB 4N5Y), downloaded from the RCSB Protein Data Bank.
Hemagglutinin from A/Jiangxi-Donghu/346/2013 influenza virus — The crystal structure of hemagglutinin from a/jiangxi-donghu/346/2013 influenza virus — X-ray structure, 2015 (PDB 4WSX), downloaded from the RCSB Protein Data Bank.
1934 Human H1 Hemagglutinin — 1934 human h1 hemagglutinin — X-ray structure, 2004 (PDB 1RU7), downloaded from the RCSB Protein Data Bank.
H10 from human-infecting H10N8 in complex with avian receptor — Structure of h10 from human-infecting h10n8 in complex with avian receptor — X-ray structure, 2015 (PDB 4QY1), downloaded from the RCSB Protein Data Bank.
H1N1pdm Hemagglutinin — Crystal structure of h1n1pdm hemagglutinin — X-ray structure, 2010 (PDB 3M6S), downloaded from the RCSB Protein Data Bank.
Hemagglutinin H17 derived the bat influenza A virus — The crystal structure of the hemagglutinin h17 derived the bat influenza a virus — X-ray structure, 2013 (PDB 4H32), downloaded from the RCSB Protein Data Bank.
Newcastle disease virus hemagglutinin-neuraminidase — Crystal structure of the newcastle disease virus hemagglutinin-neuraminidase complexed with thiosialoside — X-ray structure, 2004 (PDB 1USX), downloaded from the RCSB Protein Data Bank.
Newcastle disease virus hemagglutinin-neuraminidase: Evidence for a… — Newcastle disease virus hemagglutinin-neuraminidase: evidence for a second sialic acid binding site and implications for fusion — X-ray structure, 2004 (PDB 1USR), downloaded from the RCSB Protein Data Bank.
B/Perth Neuraminidase D197E mutant in complex with Peramivir — Crystal structure of b/perth neuraminidase d197e mutant in complex with peramivir — X-ray structure, 2010 (PDB 3K39), downloaded from the RCSB Protein Data Bank.
B/Perth Neuraminidase D197E mutant in complex with Oseltamivir — Crystal structure of b/perth neuraminidase d197e mutant in complex with oseltamivir — X-ray structure, 2010 (PDB 3K3A), downloaded from the RCSB Protein Data Bank.
Three-dimensional structure of influenza a N9 neuraminidase and its… (1NNB) — Three-dimensional structure of influenza a n9 neuraminidase and its complex with the inhibitor 2-deoxy 2,3-dehydro-n-acetyl neuraminic acid — X-ray structure, 1994 (PDB 1NNB), downloaded from the RCSB Protein Data Bank.
Multifunctional paramyxovirus hemagglutinin-neuraminidase — Structure of the multifunctional paramyxovirus hemagglutinin-neuraminidase — X-ray structure, 2001 (PDB 1E8V), downloaded from the RCSB Protein Data Bank.
B/Perth Neuraminidase in complex with Peramivir — Crystal structure of b/perth neuraminidase in complex with peramivir — X-ray structure, 2010 (PDB 3K37), downloaded from the RCSB Protein Data Bank.
Wide Open 1.3A Structure of a Multi-drug Resistant HIV-1 Protease… — Wide open 1.3a structure of a multi-drug resistant hiv-1 protease represents a novel drug target — X-ray structure, 2005 (PDB 1TW7), downloaded from the RCSB Protein Data Bank.
HIV-1 protease, unbound subtype B L63P construct — Hiv-1 protease, unbound subtype b l63p construct — X-ray structure, 2017 (PDB 5T84), downloaded from the RCSB Protein Data Bank.
HIV-1 protease in complex with asymmetric inhibitor, BEA568 — Hiv-1 protease in complex with asymmetric inhibitor, bea568 — X-ray structure, 2004 (PDB 1WBK), downloaded from the RCSB Protein Data Bank.
X-ray crystal structure of darunavir-resistant HIV-1 protease (P30)… — X-ray crystal structure of darunavir-resistant hiv-1 protease (p30) in apo state — X-ray structure, 2020 (PDB 6OGV), downloaded from the RCSB Protein Data Bank.
Multidrug-resistant clinical isolate A02 HIV-1 protease — Crystal structure of multidrug-resistant clinical isolate a02 hiv-1 protease in complex with ritonavir — X-ray structure, 2014 (PDB 4NJV), downloaded from the RCSB Protein Data Bank.
HIV-1 protease in complex with inhibitor AHA455 — Hiv-1 protease in complex with inhibitor aha455 — X-ray structure, 2005 (PDB 2BQV), downloaded from the RCSB Protein Data Bank.
HIV-1 protease triple mutant (V32I,I47V,V82I) with tetrahedral… — Room temperature x-ray structure of hiv-1 protease triple mutant (v32i,i47v,v82i) with tetrahedral intermediate of keto-darunavir — X-ray structure, 2020 (PDB 6PU8), downloaded from the RCSB Protein Data Bank.
HIV-1 Protease Multiple Mutant P51 — Crystal structure of hiv-1 protease multiple mutant p51 — X-ray structure, 2014 (PDB 4NPU), downloaded from the RCSB Protein Data Bank.
TEN domain of the Telomerase Reverse Transcriptase — Crystal structure of the ten domain of the telomerase reverse transcriptase — X-ray structure, 2006 (PDB 2B2A), downloaded from the RCSB Protein Data Bank.
Novel indazole nnrtis created using molecular template hybridization… — Novel indazole nnrtis created using molecular template hybridization based on crystallographic overlays — X-ray structure, 2009 (PDB 2JLE), downloaded from the RCSB Protein Data Bank.
Catalytic subunit of telomerase — Structure of the catalytic subunit of telomerase bound to its rna template and telomeric dna — X-ray structure, 2010 (PDB 3KYL), downloaded from the RCSB Protein Data Bank.
Ty3 reverse transcriptase bound to DNA/RNA — Ty3 reverse transcriptase bound to dna/rna — X-ray structure, 2014 (PDB 4OL8), downloaded from the RCSB Protein Data Bank.
Unliganded reverse transcriptase from the human immunodeficiency… — The structure of unliganded reverse transcriptase from the human immunodeficiency virus type 1 — X-ray structure, 1995 (PDB 1HMV), downloaded from the RCSB Protein Data Bank.
B/Perth Neuraminidase D197E mutant — Crystal structure of b/perth neuraminidase d197e mutant — X-ray structure, 2010 (PDB 3K38), downloaded from the RCSB Protein Data Bank.
MERS-CoV S protein with 3down-RBDs — Structure of mers-cov s protein with 3down-rbds — Cryo-EM structure, 2026 (PDB 22FY), downloaded from the RCSB Protein Data Bank.
Post-fusion structure of MERS-CoV spike glycoprotein — Post-fusion structure of mers-cov spike glycoprotein — Cryo-EM structure, 2026 (PDB 22EC), downloaded from the RCSB Protein Data Bank.
HIV-1 protease in complex with symmetric inhibitor, BEA450 — Hiv-1 protease in complex with symmetric inhibitor, bea450 — X-ray structure, 2004 (PDB 1WBM), downloaded from the RCSB Protein Data Bank.
The Atomic Structure of Rice dwarf Virus (RDV) — The atomic structure of rice dwarf virus (rdv) — X-ray structure, 2003 (PDB 1UF2), downloaded from the RCSB Protein Data Bank.
Three-dimensional structure of influenza a N9 neuraminidase and its… (1NNA) — Three-dimensional structure of influenza a n9 neuraminidase and its complex with the inhibitor 2-deoxy 2,3-dehydro-n-acetyl neuraminic acid — X-ray structure, 1994 (PDB 1NNA), downloaded from the RCSB Protein Data Bank.
N-terminal domain of the yeast telomerase reverse transcriptase — Structure of the n-terminal domain of the yeast telomerase reverse transcriptase — X-ray structure, 2017 (PDB 5NPT), downloaded from the RCSB Protein Data Bank.
HIV-1 reverse transcriptase in complex with GW426318 — Crystal structure of hiv-1 reverse transcriptase in complex with gw426318 — X-ray structure, 2004 (PDB 1TKT), downloaded from the RCSB Protein Data Bank.
HIV-1 reverse transcriptase in complex with GW429576 — Crystal structure of hiv-1 reverse transcriptase in complex with gw429576 — X-ray structure, 2004 (PDB 1TKZ), downloaded from the RCSB Protein Data Bank.
HIV-1 reverse transcriptase in complex with GW451211 — Crystal structure of hiv-1 reverse transcriptase in complex with gw451211 — X-ray structure, 2004 (PDB 1TL1), downloaded from the RCSB Protein Data Bank.
Synthetic HIV-1 capsid c-terminal domain (ctd) C198S mutant — Crystal structure of synthetic hiv-1 capsid c-terminal domain (ctd) c198s mutant — X-ray structure, 2014 (PDB 4M0I), downloaded from the RCSB Protein Data Bank.
HIV-1 CA 1/2-hexamer — Structure of hiv-1 ca 1/2-hexamer — X-ray structure, 2019 (PDB 6OBH), downloaded from the RCSB Protein Data Bank.
HIV-1 CA N-terminal domain, open conformation — Hiv-1 ca n-terminal domain, open conformation — X-ray structure, 2016 (PDB 5HGK), downloaded from the RCSB Protein Data Bank.
MicroED Structure of the CTD-SP1 fragment of HIV-1 Gag (6N3U) — Microed structure of the ctd-sp1 fragment of hiv-1 gag with bound maturation inhibitor bevirimat. — Cryo-EM structure, 2018 (PDB 6N3U), downloaded from the RCSB Protein Data Bank.
MicroED Structure of the CTD-SP1 fragment of HIV-1 Gag (6N3J) — Microed structure of the ctd-sp1 fragment of hiv-1 gag — Cryo-EM structure, 2018 (PDB 6N3J), downloaded from the RCSB Protein Data Bank.
Hexameric HIV-1 CA, open conformation — Hexameric hiv-1 ca, open conformation — X-ray structure, 2016 (PDB 5HGL), downloaded from the RCSB Protein Data Bank.
T58S/T107I/P122A mutant of the HIV-1 capsid protein — Structure of the t58s/t107i/p122a mutant of the hiv-1 capsid protein — X-ray structure, 2018 (PDB 6AXT), downloaded from the RCSB Protein Data Bank.
Hepatitis B core-antigen in complex with scFv e13 — Hepatitis b core-antigen in complex with scfv e13 — X-ray structure, 2018 (PDB 6CWD), downloaded from the RCSB Protein Data Bank.
Hantaan orthohantavirus (HTNV) polymerase - Apo core endonuclease — Structure of hantaan orthohantavirus (htnv) polymerase - apo core endonuclease — Cryo-EM structure, 2024 (PDB 8P1K), downloaded from the RCSB Protein Data Bank.
Hantaan orthohantavirus (HTNV) polymerase - Apo full length — Structure of hantaan orthohantavirus (htnv) polymerase - apo full length — Cryo-EM structure, 2024 (PDB 8P1L), downloaded from the RCSB Protein Data Bank.
Hantaan virus polymerase in hexameric state — Hantaan virus polymerase in hexameric state — Cryo-EM structure, 2024 (PDB 8QHD), downloaded from the RCSB Protein Data Bank.
Hantaan orthohantavirus (HTNV) polymerase - Apo core — Structure of hantaan orthohantavirus (htnv) polymerase - apo core — Cryo-EM structure, 2024 (PDB 8P1J), downloaded from the RCSB Protein Data Bank.
Apo Hantaan virus polymerase in monomeric state — Apo hantaan virus polymerase in monomeric state — Cryo-EM structure, 2024 (PDB 8QE5), downloaded from the RCSB Protein Data Bank.
A triple beta-spiral in the adenovirus fibre shaft reveals a new… — A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for biological fibres — X-ray structure, 1999 (PDB 1QIU), downloaded from the RCSB Protein Data Bank.
Human adenovirus penton base 2 12 chimera — human adenovirus penton base 2 12 chimera — X-ray structure, 2006 (PDB 2C6S), downloaded from the RCSB Protein Data Bank.
Knob domain from adenovirus serotype 12 — Knob domain from adenovirus serotype 12 — X-ray structure, 1999 (PDB 1NOB), downloaded from the RCSB Protein Data Bank.
Adenovirus hexon displaying BAP insertion in the HVR5 region — Adenovirus hexon displaying bap insertion in the hvr5 region — Cryo-EM structure, 2026 (PDB 10BU), downloaded from the RCSB Protein Data Bank.
Adenovirus Type 5 Fiber Knob protein at 1.49A resolution — Adenovirus type 5 fiber knob protein at 1.49a resolution — X-ray structure, 2019 (PDB 6HCN), downloaded from the RCSB Protein Data Bank.
Human Adenovirus type 7 fiber knob — Crystal structure of the human adenovirus type 7 fiber knob — X-ray structure, 2008 (PDB 3EXW), downloaded from the RCSB Protein Data Bank.
SaPI1 neck structure with DNA, tail completion protein, and tape… — Sapi1 neck structure with dna, tail completion protein, and tape measure protein — Cryo-EM structure, 2025 (PDB 9MU2), downloaded from the RCSB Protein Data Bank.
SaPI1 neck structure — Sapi1 neck structure — Cryo-EM structure, 2025 (PDB 9MU3), downloaded from the RCSB Protein Data Bank.
Receptor-binding domain of the bacteriophage T4 short tail fibre — Structure of the receptor-binding domain of the bacteriophage t4 short tail fibre — X-ray structure, 2003 (PDB 1OCY), downloaded from the RCSB Protein Data Bank.
In-situ gp10-gp26 from bacteriophage P22 — Cryo-em structure of the in-situ gp10-gp26 from bacteriophage p22 — Cryo-EM structure, 2023 (PDB 8EAP), downloaded from the RCSB Protein Data Bank.
Agrobacterium phage 7-7-1 neck 2 + tail terminator + tail sheath +… — Agrobacterium phage 7-7-1 neck 2 + tail terminator + tail sheath + tail tube — Cryo-EM structure, 2025 (PDB 9RKS), downloaded from the RCSB Protein Data Bank.
Bacteriophage Goslar Tail Assembly — Bacteriophage goslar tail assembly — Cryo-EM structure, 2026 (PDB 11HF), downloaded from the RCSB Protein Data Bank.
Remodeling of the bacteriophage T7 during initial infection — Remodeling of the bacteriophage t7 during initial infection — Cryo-EM structure, 2023 (PDB 8E4G), downloaded from the RCSB Protein Data Bank.
Bacteriophage PhiTE extended connector complex — Bacteriophage phite extended connector complex — Cryo-EM structure, 2025 (PDB 9CC7), downloaded from the RCSB Protein Data Bank.
Portal-tail complex of mature T7 — portal-tail complex of mature t7 — Cryo-EM structure, 2024 (PDB 9JYZ), downloaded from the RCSB Protein Data Bank.
Apo Hantaan virus polymerase in dimeric state — Apo hantaan virus polymerase in dimeric state — Cryo-EM structure, 2024 (PDB 8QGU), downloaded from the RCSB Protein Data Bank.
Apo Hantaan virus polymerase core — Apo hantaan virus polymerase core — Cryo-EM structure, 2023 (PDB 8C4S), downloaded from the RCSB Protein Data Bank.
Machupo virus polymerase L — Cryo-em structure of machupo virus polymerase l — Cryo-EM structure, 2021 (PDB 7VH3), downloaded from the RCSB Protein Data Bank.
HIV-1 CA hexamer in complex with IP6, orthorhombic crystal form — Hiv-1 ca hexamer in complex with ip6, orthorhombic crystal form — X-ray structure, 2018 (PDB 6BHT), downloaded from the RCSB Protein Data Bank.
V11I/T58A/P122A mutant of the HIV-1 capsid protein — Structure of the v11i/t58a/p122a mutant of the hiv-1 capsid protein — X-ray structure, 2018 (PDB 6AXS), downloaded from the RCSB Protein Data Bank.
Adenovirus serotype 5 hexon at 1.6A resolution — Crystal structure of adenovirus serotype 5 hexon at 1.6a resolution — X-ray structure, 2011 (PDB 3TG7), downloaded from the RCSB Protein Data Bank.
Model of the fiber tail and its interactions with the penton base of… — Model of the fiber tail and its interactions with the penton base of human adenovirus by cryo-electron microscopy — Cryo-EM structure, 2011 (PDB 3IZO), downloaded from the RCSB Protein Data Bank.
Ad16 fiber knob — Crystal structure of ad16 fiber knob — X-ray structure, 2008 (PDB 3CNC), downloaded from the RCSB Protein Data Bank.