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Biomolecules & metabolites: 178 3D models

Water, gases, sugars, nucleotides, amino acids, ions (real sizes 0.1–1 nm). Each one is a ready-made 3D model you can turn, recolour and place in a figure — open BioDioRama and type its name in the Library search.

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Glycine — C2H5NO2, 75.07 g/mol. Real 3D structure from PubChem.
L-alanine — C3H7NO2, 89.09 g/mol. Real 3D structure from PubChem.
L-valine — C5H11NO2, 117.15 g/mol. Real 3D structure from PubChem.
L-leucine — C6H13NO2, 131.17 g/mol. Real 3D structure from PubChem.
L-isoleucine — C6H13NO2, 131.17 g/mol. Real 3D structure from PubChem.
L-proline — C5H9NO2, 115.13 g/mol. Real 3D structure from PubChem.
L-phenylalanine — C9H11NO2, 165.19 g/mol. Real 3D structure from PubChem.
L-tryptophan — C11H12N2O2, 204.22 g/mol. Real 3D structure from PubChem.
L-methionine — C5H11NO2S, 149.21 g/mol. Real 3D structure from PubChem.
L-serine — C3H7NO3, 105.09 g/mol. Real 3D structure from PubChem.
L-threonine — C4H9NO3, 119.12 g/mol. Real 3D structure from PubChem.
L-cysteine — C3H7NO2S, 121.16 g/mol. Real 3D structure from PubChem.
L-tyrosine — C9H11NO3, 181.19 g/mol. Real 3D structure from PubChem.
L-asparagine — C4H8N2O3, 132.12 g/mol. Real 3D structure from PubChem.
L-glutamine — C5H10N2O3, 146.14 g/mol. Real 3D structure from PubChem.
L-aspartic acid — C4H7NO4, 133.1 g/mol. Real 3D structure from PubChem.
L-glutamic acid — C5H9NO4, 147.13 g/mol. Real 3D structure from PubChem.
L-lysine — C6H14N2O2, 146.19 g/mol. Real 3D structure from PubChem.
L-arginine — C6H14N4O2, 174.2 g/mol. Real 3D structure from PubChem.
L-histidine — C6H9N3O2, 155.15 g/mol. Real 3D structure from PubChem.
Adenosine — C10H13N5O4, 267.24 g/mol. Real 3D structure from PubChem.
Guanosine — C10H13N5O5, 283.24 g/mol. Real 3D structure from PubChem.
Cytidine — C9H13N3O5, 243.22 g/mol. Real 3D structure from PubChem.
Thymidine — C10H14N2O5, 242.23 g/mol. Real 3D structure from PubChem.
Uridine — C9H12N2O6, 244.2 g/mol. Real 3D structure from PubChem.
AMP — C10H14N5O7P, 347.22 g/mol. Real 3D structure from PubChem.
ADP — C10H15N5O10P2, 427.2 g/mol. Real 3D structure from PubChem.
ATP — The energy currency of the cell. C10H16N5O13P3, 507.18 g/mol. Real 3D structure from PubChem.
GTP — C10H16N5O14P3, 523.18 g/mol. Real 3D structure from PubChem.
Cyclic AMP — C10H12N5O6P, 329.21 g/mol. Real 3D structure from PubChem.
NAD⁺ — C21H27N7O14P2, 663.4 g/mol. Real 3D structure from PubChem.
NADH — C21H29N7O14P2, 665.4 g/mol. Real 3D structure from PubChem.
NADP⁺ — C21H28N7O17P3, 743.4 g/mol. Real 3D structure from PubChem.
FAD — C27H33N9O15P2, 785.5 g/mol. Real 3D structure from PubChem.
Coenzyme A — C21H36N7O16P3S, 767.5 g/mol. Real 3D structure from PubChem.
Acetyl-CoA — C23H38N7O17P3S, 809.6 g/mol. Real 3D structure from PubChem.
Glucose — The sugar cells burn for energy. C6H12O6, 180.16 g/mol. Real 3D structure from PubChem.
Glucose 6-phosphate — C6H13O9P, 260.14 g/mol. Real 3D structure from PubChem.
Fructose — C6H12O6, 180.16 g/mol. Real 3D structure from PubChem.
Galactose — C6H12O6, 180.16 g/mol. Real 3D structure from PubChem.
Ribose — C5H10O5, 150.13 g/mol. Real 3D structure from PubChem.
Deoxyribose — C5H10O4, 134.13 g/mol. Real 3D structure from PubChem.
Lactose — C12H22O11, 342.3 g/mol. Real 3D structure from PubChem.
Maltose — C12H22O11, 342.3 g/mol. Real 3D structure from PubChem.
Pyruvic acid — C3H4O3, 88.06 g/mol. Real 3D structure from PubChem.
Citric acid — C6H8O7, 192.12 g/mol. Real 3D structure from PubChem.
Succinic acid — C4H6O4, 118.09 g/mol. Real 3D structure from PubChem.
Fumaric acid — C4H4O4, 116.07 g/mol. Real 3D structure from PubChem.
Malic acid — C4H6O5, 134.09 g/mol. Real 3D structure from PubChem.
Oxaloacetic acid — C4H4O5, 132.07 g/mol. Real 3D structure from PubChem.
Alpha-ketoglutaric acid — C5H6O5, 146.1 g/mol. Real 3D structure from PubChem.
Uric acid — C5H4N4O3, 168.11 g/mol. Real 3D structure from PubChem.
Creatinine — C4H7N3O, 113.12 g/mol. Real 3D structure from PubChem.
Bilirubin — C33H36N4O6, 584.7 g/mol. Real 3D structure from PubChem.
Heme — Iron porphyrin that binds oxygen in hemoglobin. C34H32FeN4O4, 616.5 g/mol. Real 3D structure from PubChem.
Chlorophyll a — The main light-harvesting pigment of plants. C55H72MgN4O5, 893.5 g/mol. Real 3D structure from PubChem.
Beta-carotene — C40H56, 536.9 g/mol. Real 3D structure from PubChem.
Vitamin A (retinol) — C20H30O, 286.5 g/mol. Real 3D structure from PubChem.
Vitamin C (ascorbic acid) — C6H8O6, 176.12 g/mol. Real 3D structure from PubChem.
Vitamin D3 — C27H44O, 384.6 g/mol. Real 3D structure from PubChem.
Vitamin E (α-tocopherol) — C29H50O2, 430.7 g/mol. Real 3D structure from PubChem.
Folic acid — C19H19N7O6, 441.4 g/mol. Real 3D structure from PubChem.
Biotin — C10H16N2O3S, 244.31 g/mol. Real 3D structure from PubChem.
Vitamin B1 (thiamine) — C12H17N4OS+, 265.36 g/mol. Real 3D structure from PubChem.
Vitamin B2 (riboflavin) — C17H20N4O6, 376.4 g/mol. Real 3D structure from PubChem.
Vitamin B6 (pyridoxine) — C8H11NO3, 169.18 g/mol. Real 3D structure from PubChem.
Melatonin — C13H16N2O2, 232.28 g/mol. Real 3D structure from PubChem.
Serotonin — C10H12N2O, 176.21 g/mol. Real 3D structure from PubChem.
Epinephrine — C9H13NO3, 183.2 g/mol. Real 3D structure from PubChem.
Norepinephrine — C8H11NO3, 169.18 g/mol. Real 3D structure from PubChem.
Acetylcholine — C7H16NO2+, 146.21 g/mol. Real 3D structure from PubChem.
GABA — C4H9NO2, 103.12 g/mol. Real 3D structure from PubChem.
Histamine — C5H9N3, 111.15 g/mol. Real 3D structure from PubChem.
Dopamine — C8H11NO2, 153.18 g/mol. Real 3D structure from PubChem.
Testosterone — C19H28O2, 288.4 g/mol. Real 3D structure from PubChem.
Estradiol — C18H24O2, 272.4 g/mol. Real 3D structure from PubChem.
Progesterone — C21H30O2, 314.5 g/mol. Real 3D structure from PubChem.
Cortisol — C21H30O5, 362.5 g/mol. Real 3D structure from PubChem.
Aldosterone — C21H28O5, 360.4 g/mol. Real 3D structure from PubChem.
Thyroxine — C15H11I4NO4, 776.87 g/mol. Real 3D structure from PubChem.
Prostaglandin E2 — C20H32O5, 352.5 g/mol. Real 3D structure from PubChem.
Leukotriene B4 — C20H32O4, 336.5 g/mol. Real 3D structure from PubChem.
Creatine — C4H9N3O2, 131.13 g/mol. Real 3D structure from PubChem.
L-carnitine — C7H15NO3, 161.2 g/mol. Real 3D structure from PubChem.
Taurine — C2H7NO3S, 125.15 g/mol. Real 3D structure from PubChem.
Choline — C5H14NO+, 104.17 g/mol. Real 3D structure from PubChem.
Ethanolamine — C2H7NO, 61.08 g/mol. Real 3D structure from PubChem.
Myo-inositol — C6H12O6, 180.16 g/mol. Real 3D structure from PubChem.
Lipoic acid — C8H14O2S2, 206.3 g/mol. Real 3D structure from PubChem.
Ubiquinone — Real 3D structure from PubChem.
N-acetylneuraminic acid — C11H19NO9, 309.27 g/mol. Real 3D structure from PubChem.
N-acetylgalactosamine — GalNAc — trivalent GalNAc on siRNA targets the liver asialoglycoprotein receptor. C8H15NO6, 221.21 g/mol. Real 3D structure from PubChem.
Mannose — C6H12O6, 180.16 g/mol. Real 3D structure from PubChem.
Fucose — C6H12O5, 164.16 g/mol. Real 3D structure from PubChem.
Bradykinin — C50H73N15O11, 1060.2 g/mol. Real 3D structure from PubChem.
Substance P — C63H98N18O13S, 1347.6 g/mol. Real 3D structure from PubChem.
Angiotensin II — C50H71N13O12, 1046.2 g/mol. Real 3D structure from PubChem.
Endothelin 1 — C109H159N25O32S5, 2491.9 g/mol. Real 3D structure from PubChem.
Glutathione disulfide — C20H32N6O12S2, 612.6 g/mol. Real 3D structure from PubChem.
SAM (S-adenosylmethionine) — C15H22N6O5S, 398.4 g/mol. Real 3D structure from PubChem.
Nicotinamide — C6H6N2O, 122.12 g/mol. Real 3D structure from PubChem.
Urea — CH4N2O, 60.06 g/mol. Real 3D structure from PubChem.
Ammonia — H3N, 17.03 g/mol. Real 3D structure from PubChem.
Lactate — C3H5O3-, 89.07 g/mol. Real 3D structure from PubChem.
Anandamide — Real 3D structure from PubChem.
2-arachidonoylglycerol — Real 3D structure from PubChem.
Phylloquinone — Real 3D structure from PubChem.
Menaquinone — Real 3D structure from PubChem.
Cyanocobalamin — Real 3D structure from PubChem.
Pantothenic acid — Real 3D structure from PubChem.
Tetrahydrofolic acid — Real 3D structure from PubChem.
Ergocalciferol — Real 3D structure from PubChem.
Calcifediol — Real 3D structure from PubChem.
Retinoic acid — Real 3D structure from PubChem.
Carnosine — Real 3D structure from PubChem.
Kynurenine — Real 3D structure from PubChem.
Tryptamine — Real 3D structure from PubChem.
Phenethylamine — Real 3D structure from PubChem.
Tyramine — Real 3D structure from PubChem.
Cyclic GMP — Real 3D structure from PubChem.
Inositol 1,4,5-trisphosphate — Real 3D structure from PubChem.
Sphingosine-1-phosphate — Real 3D structure from PubChem.
Biliverdin — Real 3D structure from PubChem.
Porphobilinogen — Real 3D structure from PubChem.
Phosphocreatine — Real 3D structure from PubChem.
Nicotinamide mononucleotide — Real 3D structure from PubChem.
Nicotinamide riboside — Real 3D structure from PubChem.
Guanosine diphosphate — Real 3D structure from PubChem.
UDP-glucose — Real 3D structure from PubChem.
Phosphoribosyl pyrophosphate — Real 3D structure from PubChem.
Acetoacetic acid — Real 3D structure from PubChem.
3-hydroxybutyric acid — Real 3D structure from PubChem.
Glyceraldehyde 3-phosphate — Real 3D structure from PubChem.
Dihydroxyacetone phosphate — Real 3D structure from PubChem.
Phosphoenolpyruvic acid — Real 3D structure from PubChem.
2-phosphoglyceric acid — Real 3D structure from PubChem.
3-phosphoglyceric acid — Real 3D structure from PubChem.
1,3-bisphosphoglyceric acid — Real 3D structure from PubChem.
Fructose 1,6-bisphosphate — Real 3D structure from PubChem.
Fructose 6-phosphate — Real 3D structure from PubChem.
Ribulose 1,5-bisphosphate — Real 3D structure from PubChem.
Isocitric acid — Real 3D structure from PubChem.
Cis-aconitic acid — Real 3D structure from PubChem.
Ornithine — Real 3D structure from PubChem.
Citrulline — Real 3D structure from PubChem.
Argininosuccinic acid — Real 3D structure from PubChem.
Homocysteine — Real 3D structure from PubChem.
Cystathionine — Real 3D structure from PubChem.
S-adenosylhomocysteine — Real 3D structure from PubChem.
Selenocysteine — Real 3D structure from PubChem.
Hydroxyproline — Real 3D structure from PubChem.
N-acetylcysteine — Real 3D structure from PubChem.
Trimethylamine N-oxide — Real 3D structure from PubChem.
Oxalic acid — Real 3D structure from PubChem.
Glyoxylic acid — Real 3D structure from PubChem.
Formic acid — Real 3D structure from PubChem.
Butyric acid — Real 3D structure from PubChem.
Propionic acid — Real 3D structure from PubChem.
Indole-3-acetic acid — Real 3D structure from PubChem.
Abscisic acid — Real 3D structure from PubChem.
Gibberellic acid — Real 3D structure from PubChem.
Zeatin — Real 3D structure from PubChem.
Jasmonic acid — Real 3D structure from PubChem.
Ethylene — Real 3D structure from PubChem.
Brassinolide — Real 3D structure from PubChem.
Coenzyme Q10 — Real 3D structure from PubChem.
Ubiquinol — Real 3D structure from PubChem.
Lipoamide — Real 3D structure from PubChem.
Pyridoxal phosphate — Real 3D structure from PubChem.
Thiamine pyrophosphate — Real 3D structure from PubChem.
Flavin mononucleotide — Real 3D structure from PubChem.
Tetrahydrobiopterin — Real 3D structure from PubChem.
Chlorophyll b — Real 3D structure from PubChem.
Phycocyanobilin — Real 3D structure from PubChem.
Retinal — Real 3D structure from PubChem.
L-DOPA — Real 3D structure from PubChem.
Dopaquinone — Real 3D structure from PubChem.
Adrenochrome — Real 3D structure from PubChem.